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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015940116.1_cds_XP_016484447.1_75462
CDS Infomation

[gene=LOC107804989] [db_xref=GeneID:107804989] [protein=serine/threonine-protein kinase ATG1c-like] [protein_id=XP_016484447.1] [location=complement(join(120566..120805,120936..121006,121457..121745,126068..126423,126552..126913,126985..127057,127251..127359,127485..127565,127644..127737,128147..128211,128969..129027,129151..129271,130291..130539))] [gbkey=CDS]
Sequence

ATGGCTCAATCGATGAACAGAGGTGGGAGGTTTATGATTGGGGATTATGTGATTGTGAAG
CAAATCGGGACGGGTTCGTTTTCAACGGTGTGGCACGGGTGCCACCGTGTCGATGGTACA
GACGTTGCAATCAAGGAGATTGCTACTGCTAGGCTCGACCCGAAACTCCGGGAGAGCCTC
AAGTCGGAAATTATCATTTTGCAGAAGATTAATCATCCTAATATTATTCGTTTGCATGAC
ATGATTGAGGAGCCGGGAAAAATATATTTTGTTTTGGAGTACTGCAGAGGAGGTGATCTT
TCAATGTACATACAACGACGCCAAGGGAGGATCGCAGAAGCAACTGCAAAACATTTCATG
CAGCAGCTAGCATCAGGTCTAAAAATCCTTCGCGAAAACAATCTAATCCATAGGGACCTA
AAGCCTCAGAATCTTCTGTTGTCCGCAGCTGATGACAACTCCACCCTGAAGATTGCTGAT
TTTGGGTTTGCAAGGTCTTTGCAGCCTTGGGTGCTTGCAGAAACTCTATGTGGGTCGCCA
TTGTACATGGCTCCTGAAATAATGCAGCTTCAGAAGTATGATGCGAAGGCAGATCTCTGG
AGTGTTGGTGCCATTCTGTTTCAGCTTGTAACTGGCAAAACCCCGTTTACTGGAAACAAT
CAAATACAGTTGCTCCAAAACATAGTGAAGTCCACTAAATTGCAGTTTCCTCTAGATGCC
AAGCATTTAAGTCCTCATTGCATAGATTTGTGTCAAAAATTATTGCGCCGTTATCCAGTG
GAGCGCTTGACATTTGAAGAGTTCTTTAACCACCCATTTCTTGCACAGAAGCAGCCAGAT
GAGCTGTCTCGGAATCAGCAACCTCAAAGGGTAATAGATGGTTTTTCTCTGGAAAAATCC
AATCCTGGAAGGAGCACTGAGGAAACTTTTCAAGAAGATGGTTTACCTTTTATTCTAGAT
GATGATTCCAGCAGTCATCGTGGTGGTCCTTCTTTTGCTGGAATACCACAGAGATCTTCG
TGTGGATTTTCTCAGGATGCAAGAGCTGACAGGAAAGAATTTTCTAGTGCACCAAGCAAA
ACTGATCCTCCTCTGGATTGTAGTAACATCACACACAAATCAGATACTACTGGTTTTAGC
CCTAGCGAACACGGACCTTCAGAAGGGAACCTGAAGGAATCTAGTTTAATGGACCATAGA
CTATGTTCAAAAGTGTCGGATTCATTCGAGCTGATTGAGAAGGAATATGTCCTTGTATCT
AGGTCCCTCATGGACTCATCTTCTTCAGCAGCTGCATCTAGGCTTAGCAATATGCAATTC
AGATCAAGTTTTTCTCTGCAAGCCTCTGGGAACATAGAAACTAGAGTAAGTGAGCCGGTG
CTTACTGTTGGTCCTGCAACTAATAGAATAGGTCCTGTAGGAAGGTTGGAAAGTTCCTCT
TTTGTTCCAGGAGCTTCACAAGGATCCGCAGATATTATAGACCCTCTGGAGCAGCCGACT
GATGGCATGGCCAGAATTGGATCACTGCAACAATTTGCTTCTGCTATCACAGATTTAGTA
AATGAGAAGATTGCCGCAGAGAGGCATCTGGAAGCATTTTCAATTGAGCTTGTCATGCTT
GCAATATGGAAACAAGCCTTGGATGTATGTCATATGCAAGTGGCATCGGCAATTGAAGGA
ATTCCAAACCAAGAGACTACCAAATTGAGGGAGATTTTGAGGGAGAGTCGAGTTGGTCTC
AACATTAAAGAGGACACTTGTAACATTTTGCGGCCAGAGAATGTGTACTCTCATATTGAA
AGAGCATTTCTGAATGAAATTGGGAAGGCAGAGGAACTTGCCAAACATATAGAGCCTGGA
AATACAGAGGTGCCAGATGCAATGGAGATGATATTTCAATCTGCGCTTGATCTCGGCAGA
AAGGGGGCTGTTGAAGAGTACATGGGTCGGACTGAAAGTGCAGTGGTTTTTTATTCAAAA
GCAGTGCGCTTGTTAGCATTCCTTCAGGTGGAAGCACCATTACTTCTTCTAAACCCTCCA
TTCTCACTGACAGACTCCGATCGCTATAGGCTTGGAAGTTACATTGATATTCTCAATAAT
AGGCAAAGTGTTTCGAGGTCTCAAATCATGACTCTCCTCAAGTGTGAGGATCGGCACTGT
TCCCCGTGA

Peptide Sequence

PEP ID

XP_016484447.1
PEP Infomation

PREDICTED: serine/threonine-protein kinase ATG1c-like [Nicotiana tabacum]
Sequence

MAQSMNRGGRFMIGDYVIVKQIGTGSFSTVWHGCHRVDGTDVAIKEIATARLDPKLRESL
KSEIIILQKINHPNIIRLHDMIEEPGKIYFVLEYCRGGDLSMYIQRRQGRIAEATAKHFM
QQLASGLKILRENNLIHRDLKPQNLLLSAADDNSTLKIADFGFARSLQPWVLAETLCGSP
LYMAPEIMQLQKYDAKADLWSVGAILFQLVTGKTPFTGNNQIQLLQNIVKSTKLQFPLDA
KHLSPHCIDLCQKLLRRYPVERLTFEEFFNHPFLAQKQPDELSRNQQPQRVIDGFSLEKS
NPGRSTEETFQEDGLPFILDDDSSSHRGGPSFAGIPQRSSCGFSQDARADRKEFSSAPSK
TDPPLDCSNITHKSDTTGFSPSEHGPSEGNLKESSLMDHRLCSKVSDSFELIEKEYVLVS
RSLMDSSSSAAASRLSNMQFRSSFSLQASGNIETRVSEPVLTVGPATNRIGPVGRLESSS
FVPGASQGSADIIDPLEQPTDGMARIGSLQQFASAITDLVNEKIAAERHLEAFSIELVML
AIWKQALDVCHMQVASAIEGIPNQETTKLREILRESRVGLNIKEDTCNILRPENVYSHIE
RAFLNEIGKAEELAKHIEPGNTEVPDAMEMIFQSALDLGRKGAVEEYMGRTESAVVFYSK
AVRLLAFLQVEAPLLLLNPPFSLTDSDRYRLGSYIDILNNRQSVSRSQIMTLLKCEDRHC
SP

Transcript Sequence

Gene sequence data has not been registered.